diff --git a/backend/main.py b/backend/main.py
index 4b0e2c1..35a99e4 100644
--- a/backend/main.py
+++ b/backend/main.py
@@ -23,7 +23,6 @@ from .utils import (
     save_note,
     delete_note,
     search_notes,
-    parse_wiki_links,
     create_note_metadata,
     ensure_directories,
     create_folder,
@@ -336,8 +335,8 @@ async def api_documentation():
             {
                 "method": "GET",
                 "path": "/api/graph",
-                "description": "Get graph data for note visualization (wiki links)",
-                "response": "{ nodes: [{ id, label }], edges: [{ from, to }] }"
+                "description": "Get graph data for note visualization",
+                "response": "{ nodes: [{ id, label }], edges: [] }"
             },
             {
                 "method": "GET",
@@ -651,13 +650,9 @@ async def get_note(note_path: str):
         if transformed_content is not None:
             content = transformed_content
         
-        # Parse wiki links
-        links = parse_wiki_links(content)
-        
         return {
             "path": note_path,
             "content": content,
-            "links": links,
             "metadata": create_note_metadata(config['storage']['notes_dir'], note_path)
         }
     except HTTPException:
@@ -745,28 +740,22 @@ async def search(q: str):
 
 @api_router.get("/graph")
 async def get_graph():
-    """Get graph data for visualization"""
+    """Get graph data for note visualization (currently only returns nodes, link detection not implemented)"""
     try:
         notes = get_all_notes(config['storage']['notes_dir'])
         nodes = []
         edges = []
         
-        # Build graph structure
+        # Build graph structure - only nodes for now
         for note in notes:
-            nodes.append({
-                "id": note['path'],
-                "label": note['name']
-            })
-            
-            # Get links from this note
-            content = get_note_content(config['storage']['notes_dir'], note['path'])
-            if content:
-                links = parse_wiki_links(content)
-                for link in links:
-                    edges.append({
-                        "from": note['path'],
-                        "to": link
-                    })
+            if note.get('type') == 'note':  # Only include actual notes
+                nodes.append({
+                    "id": note['path'],
+                    "label": note['name']
+                })
+        
+        # Note: Link detection between notes could be implemented here using markdown link parsing
+        # For now, returning empty edges
         
         return {"nodes": nodes, "edges": edges}
     except Exception as e:
diff --git a/backend/utils.py b/backend/utils.py
index e953e93..365cf53 100644
--- a/backend/utils.py
+++ b/backend/utils.py
@@ -236,13 +236,6 @@ def delete_note(notes_dir: str, note_path: str) -> bool:
     return True
 
 
-def parse_wiki_links(content: str) -> List[str]:
-    """Extract wiki-style links [[link]] from markdown content"""
-    pattern = r'\[\[([^\]]+)\]\]'
-    matches = re.findall(pattern, content)
-    return matches
-
-
 def search_notes(notes_dir: str, query: str) -> List[Dict]:
     """Simple full-text search through all notes"""
     results = []
diff --git a/docs/index.html b/docs/index.html
index 2527a08..e9f3244 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -641,8 +641,8 @@
                 <div class="benefit-item">
                     <span class="emoji">🔗</span>
                     <div class="text">
-                        <strong>Wiki Links</strong>
-                        Connect notes with internal links
+                        <strong>Internal Links</strong>
+                        Connect notes with markdown links
                     </div>
                 </div>
 
@@ -725,7 +725,7 @@
       "url": "https://www.notediscovery.com",
       "applicationCategory": "ProductivityApplication",
       "operatingSystem": "Linux, Windows, macOS",
-      "featureList": "Markdown editor, LaTeX math equations, Mermaid diagrams, Code syntax highlighting, Dark mode, Plugin system, Internal wiki links, HTML export, Full-text search, Self-hosted, Obsidian, Evernote, Notion, Onenote, Second brain",
+      "featureList": "Markdown editor, LaTeX math equations, Mermaid diagrams, Code syntax highlighting, Dark mode, Plugin system, Internal links, HTML export, Full-text search, Self-hosted, Obsidian, Evernote, Notion, Onenote, Second brain",
       "offers": {
         "@type": "Offer",
         "price": "0",
diff --git a/documentation/FEATURES.md b/documentation/FEATURES.md
index 36d35f6..be629fa 100644
--- a/documentation/FEATURES.md
+++ b/documentation/FEATURES.md
@@ -28,7 +28,7 @@
 ## 🔗 Linking & Discovery
 
 ### Internal Links
-- **Wiki-style links** - `[[Note Name]]` syntax
+- **Markdown links** - `[Note Name](note.md)` syntax
 - **Drag to link** - Drag notes or images into the editor to insert links
 - **Click to navigate** - Jump between notes seamlessly
 - **External links** - Open in new tabs automatically
diff --git a/documentation/PLUGIN_NOTE_STATISTICS.md b/documentation/PLUGIN_NOTE_STATISTICS.md
index 1633012..2494dc5 100644
--- a/documentation/PLUGIN_NOTE_STATISTICS.md
+++ b/documentation/PLUGIN_NOTE_STATISTICS.md
@@ -55,7 +55,7 @@ curl -X POST http://localhost:8000/api/plugins/note_stats/toggle \
 
 ### 🔗 Links & References
 - **Total Links** - All `[text](url)` links
-- **Internal Links** - `[[WikiLinks]]` to other notes
+- **Internal Links** - Links to other notes (`.md` files)
 - **External Links** - HTTP/HTTPS URLs
 - **Images** - `![alt](image.png)` count
 
@@ -191,7 +191,7 @@ Find orphaned notes or track reference density.
 
 **Words:** Split on whitespace, excluding code blocks  
 **Reading Time:** `words / 200 minutes`  
-**Links:** Regex match `[text](url)` and `[[WikiLink]]`  
+**Links:** Regex match `[text](url)` markdown links  
 **Tasks:** Match `- [ ]` and `- [x]`  
 **Code Blocks:** Match ` ```language ` ` fences  
 **Headings:** Match `#`, `##`, `###` at line start  
diff --git a/frontend/app.js b/frontend/app.js
index a8bfbcf..56d0a22 100644
--- a/frontend/app.js
+++ b/frontend/app.js
@@ -2321,13 +2321,8 @@ function noteApp() {
                 }
             });
             
-            // Convert wiki-style links [[link]] to HTML links
-            let content = this.noteContent.replace(/\[\[([^\]]+)\]\]/g, (match, linkText) => {
-                return `<a href="#" style="color: var(--accent-primary);" onclick="return false;">[[${linkText}]]</a>`;
-            });
-            
             // Parse markdown
-            let html = marked.parse(content);
+            let html = marked.parse(this.noteContent);
             
             // Post-process: Add target="_blank" to external links and title attributes to images
             // Parse as DOM to safely manipulate